PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_68728_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 75aa    MW: 8152.18 Da    PI: 6.0715
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_68728_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.000544467223
                                         EETTTTEEESSHHHHHHHHHH..T CS
                              zf-C2H2  2 kCpdCgksFsrksnLkrHirt..H 23
                                         +C++Cgk++++k +   H ++  H
  cra_locus_68728_iso_1_len_332_ver_3 44 VCSICGKPCRSKTESDLHTKRtgH 67
                                         8***********998888887555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280830IPR007087Zinc finger, C2H2
PROSITE patternPS0002804567IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
MTGLSLQCGD CGTLLKSVEE AQEHAELTKH ANFVESTEAV LNLVCSICGK PCRSKTESDL  60
HTKRTGHTEF VDKTS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073802.13e-44PREDICTED: chromatin assembly factor 1 subunit A
TrEMBLS8C7162e-42S8C716_9LAMI; Uncharacterized protein
STRINGVIT_05s0029g01370.t012e-40(Vitis vinifera)